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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19760970_19761054_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19760970 - 19761054
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTGAGTGCG
5'SS Class:
major
3'SS Sequence:
CCCCGCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCAGCAC
U12 Branch Point Sequence:
GCGCTCAGCACT
Flanking Amino Acid:
NKRSPVIEFWENKVLRLSGD
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
59.5
39.8
Major BPS
46.4
-0.2
1.4
53.6
41.6
Major PPT
66.6
0.37
1
60
35.4
Minor 5ss
28.8
-2.4
3
29.1
36.7
Minor BPS
39.4
-0.7
2
51.52
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030026
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046576
19758102 - 19762590
4489