About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19761938_19762306_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19761938 - 19762306
Intron Length:
369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CCCCCGGTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAC
U12 Branch Point Sequence:
CCCCCCCCACCC
Flanking Amino Acid:
FPYLCYKNGGGVFLIPYLLI
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
45
-0.3
1.2
49.7
35.3
Major PPT
62.2
0.27
0.9
51.9
36.7
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
39.8
-0.7
2
44.52
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030026
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046576
19758102 - 19762590
4489