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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19771065_19771154_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19771065 - 19771154
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGAGCT
5'SS Class:
major
3'SS Sequence:
CGTCCCTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
CTCTCCCTGACC
Flanking Amino Acid:
KINDMVDFPVRSLDLSKFCI
Intron Amino Acid Position:
1224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
69
35.8
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
66.7
0.38
0.8
58.1
33.1
Minor 5ss
28.1
-2.5
3.3
40.6
45.1
Minor BPS
61.7
0.35
1.7
70.52
41.3

Associated Gene:

Gene:
USP19
Ensembl Gene ID:
ENSAPLG00000007654
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048076
19765591 - 19783139
17549
ENSAPLT00000031283
19765591 - 19783003
17413
ENSAPLT00000007985
19768664 - 19783003
14340