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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19773485_19773573_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19773485 - 19773573
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CCTCCTTGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCGTGAC
U12 Branch Point Sequence:
CCTGCCGTGACC
Flanking Amino Acid:
RLAQLLEGYARYSVSVFQPP
Intron Amino Acid Position:
942

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
48.6
-0
1.2
40.4
40
Major PPT
71.3
0.48
0.9
64
36.7
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
48.8
-0.1
2.2
60.91
45.2

Associated Gene:

Gene:
USP19
Ensembl Gene ID:
ENSAPLG00000007654
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048076
19765591 - 19783139
17549
ENSAPLT00000031283
19765591 - 19783003
17413
ENSAPLT00000007985
19768664 - 19783003
14340