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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19774031_19774184_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19774031 - 19774184
Intron Length:
154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCCCAT
U12 Branch Point Sequence:
CCATGCCCAACA
Flanking Amino Acid:
ERVVELQVQQRPQVPSVPVA
Intron Amino Acid Position:
857

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.8
43.8
Major BPS
59.9
0.25
1.3
70.1
37
Major PPT
86.5
0.82
0.7
81.2
23.9
Minor 5ss
33.3
-1.9
2.8
39.7
45.9
Minor BPS
43.1
-0.5
2.2
52.97
45

Associated Gene:

Gene:
USP19
Ensembl Gene ID:
ENSAPLG00000007654
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007985
19768664 - 19783003
14340
ENSAPLT00000048076
19765591 - 19783139
17549
ENSAPLT00000031283
19765591 - 19783003
17413