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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19776167_19776474_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19776167 - 19776474
Intron Length:
308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTTTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCACAC
U12 Branch Point Sequence:
TCTGCTTTGACA
Flanking Amino Acid:
AVKQEPHIPSPKPTCMVPPM
Intron Amino Acid Position:
537

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
68.8
38
Major BPS
55.5
0.14
1
64.3
32.4
Major PPT
75.5
0.57
1
71.7
38.2
Minor 5ss
27.1
-2.6
3
31.8
42.6
Minor BPS
68.6
0.58
1.4
73.66
38.8

Associated Gene:

Gene:
USP19
Ensembl Gene ID:
ENSAPLG00000007654
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007985
19768664 - 19783003
14340
ENSAPLT00000048076
19765591 - 19783139
17549
ENSAPLT00000031283
19765591 - 19783003
17413