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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19777101_19777593_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19777101 - 19777593
Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTCC
5'SS Class:
strong_major
3'SS Sequence:
GCCTGTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
CACTCCTGACTT
Flanking Amino Acid:
HTVFRWQVKLRNLIEPDQCT
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
69.2
36.3
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
75.6
0.58
0.9
68.5
37.3
Minor 5ss
44.1
-0.6
3
59.5
45.4
Minor BPS
50.5
0.09
1.8
65.53
45.3

Associated Gene:

Gene:
USP19
Ensembl Gene ID:
ENSAPLG00000007654
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048076
19765591 - 19783139
17549
ENSAPLT00000031283
19765591 - 19783003
17413
ENSAPLT00000007985
19768664 - 19783003
14340