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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19777666_19777771_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19777666 - 19777771
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGAGCG
5'SS Class:
major
3'SS Sequence:
GATTTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CTCTTCTCACTT
Flanking Amino Acid:
EQDFTLVFQTSDVNFLRLHP
Intron Amino Acid Position:
402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
63.6
41.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
83.4
0.75
0.8
77.3
36.6
Minor 5ss
29.7
-2.3
3.4
39.3
46.1
Minor BPS
49.2
0.02
1.8
66.82
44.9

Associated Gene:

Gene:
USP19
Ensembl Gene ID:
ENSAPLG00000007654
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031283
19765591 - 19783003
17413
ENSAPLT00000007985
19768664 - 19783003
14340
ENSAPLT00000048076
19765591 - 19783139
17549