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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19778295_19778625_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19778295 - 19778625
Intron Length:
331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTGAG
5'SS Class:
major
3'SS Sequence:
TTTTCCTCTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTTCCTCTAAAG
Flanking Amino Acid:
LADLAPPLEKAVVLAKETVP
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.2
63.4
43.1
Major BPS
77.5
0.68
1
79.6
33
Major PPT
78.3
0.64
1
79.3
26.9
Minor 5ss
36.5
-1.5
3.4
48.8
47.4
Minor BPS
55.2
0.02
1.8
67.15
40

Associated Gene:

Gene:
USP19
Ensembl Gene ID:
ENSAPLG00000007654
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007985
19768664 - 19783003
14340
ENSAPLT00000048076
19765591 - 19783139
17549
ENSAPLT00000031283
19765591 - 19783003
17413