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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19779034_19779312_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19779034 - 19779312
Intron Length:
279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
CTGCTTTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGACAT
U12 Branch Point Sequence:
CTGCTTTTGACA
Flanking Amino Acid:
IPLHTWTSLLKRRKDGSKEL
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
67.9
37.5
Major BPS
52.4
0.06
1.3
60.7
45.9
Major PPT
74.7
0.56
1
71.5
38.3
Minor 5ss
29.9
-2.3
3.3
35.5
43.1
Minor BPS
57.7
0.24
1.3
62.5
38.2

Associated Gene:

Gene:
USP19
Ensembl Gene ID:
ENSAPLG00000007654
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048076
19765591 - 19783139
17549
ENSAPLT00000031283
19765591 - 19783003
17413
ENSAPLT00000007985
19768664 - 19783003
14340