About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19779447_19779979_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19779447 - 19779979
Intron Length:
533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGACTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
CCTTCTTTGACT
Flanking Amino Acid:
TDTDCVVKLPDGRQWSCQFY
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
68.4
36.4
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
80.1
0.68
0.9
74.1
35.3
Minor 5ss
35.6
-1.6
3.5
47.4
48.2
Minor BPS
75.5
0.88
1.2
82.48
39.6

Associated Gene:

Gene:
USP19
Ensembl Gene ID:
ENSAPLG00000007654
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048076
19765591 - 19783139
17549
ENSAPLT00000031283
19765591 - 19783003
17413
ENSAPLT00000007985
19768664 - 19783003
14340