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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19781265_19782894_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
19781265 - 19782894
Intron Length:
1630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCCCACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGAACAA
U12 Branch Point Sequence:
ACAGCCCCACCT
Flanking Amino Acid:
KDRANQESKEVSRPEPEQAE
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
45.2
-0.3
1.1
47.1
36.1
Major PPT
67.5
0.39
0.9
59.2
37
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
41.3
-0.5
2.1
56.11
45.7

Associated Gene:

Gene:
USP19
Ensembl Gene ID:
ENSAPLG00000007654
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048076
19765591 - 19783139
17549