About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19787078_19787206_R


Intron Information:

Intron Rank:
30

Intron Class:
major-like

Intron Phase:
0

Intron Coordinates:
19787078 - 19787206

Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTGAAGCGT

5'SS Class:
major

3'SS Sequence:
CCGGGCGGCGCAG|G

3'SS Class:
degenerate_major

U2 Branch Point Sequence:
GCTTGAG

U12 Branch Point Sequence:
GGACCGGTACCG

Flanking Amino Acid:
LLEGQTDALKELVQHRAQGA

Intron Amino Acid Position:
1731

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
74.5
0.58
1
62.8
43.2

Major BPS
46.9
-0.1
1.7
45
47.8

Major PPT
49.7
-0
1.1
41.3
38.3

Minor 5ss
26.4
-2.7
3.3
38.6
46.5

Minor BPS
35.2
-1.2
2.5
39.14
43.6

Associated Gene:

Gene:
LAMB2

Ensembl Gene ID:

Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

19786732 - 19795991
9260