About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19792160_19792347_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19792160 - 19792347
Intron Length:
188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTGCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
CATCTCACAATG
Flanking Amino Acid:
YEAEDARLHQGSVVEREPPT
Intron Amino Acid Position:
644

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
72.4
0.5
0.9
64.4
36.6
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
44
-0.5
1.8
46.95
40

Associated Gene:

Gene:
LAMB2
Ensembl Gene ID:
ENSAPLG00000008249
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019840
19786732 - 19797169
10438
ENSAPLT00000008572
19786732 - 19795991
9260