Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19792484_19792561_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

19792484 - 19792561

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTGAGTTTT

5'SS Class:

major

3'SS Sequence:

GCTGGGGTGCCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GGCTGAC

U12 Branch Point Sequence:

GGGGGCTGACGG

Flanking Amino Acid:

DCDVGGARDNLCAVETGQCR

Intron Amino Acid Position:

598

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.7

0.56

1.1

77.3

33.6

Major BPS

49.4

-0

1.3

42.8

41.8

Major PPT

0.05

1.2

41.8

47.3

Minor 5ss

43.6

-0.7

3.1

68.1

42.7

Minor BPS

32.7

-1.4

2.1

41.4

Associated Gene:

Gene:

LAMB2

Ensembl Gene ID:

ENSAPLG00000008249

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019840

19786732 - 19797169

10438

ENSAPLT00000008572

19786732 - 19795991

9260