About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19798391_19798514_R

Intron Information:

Intron Rank:
146927
Intron Class:
major
Intron Phase:
Intron Coordinates:
19798391 - 19798514
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TGCCCCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCCCAT
U12 Branch Point Sequence:
CCCACCCCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
50.9
0.02
1.3
60.4
37.5
Major PPT
73.2
0.52
0.8
65.8
30.2
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
40.8
-0.6
2
53.32
47.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026359
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043221
19796436 - 19811305
14870