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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19800215_19800290_R

Intron Information:

Intron Rank:
146931
Intron Class:
major
Intron Phase:
Intron Coordinates:
19800215 - 19800290
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCCCC
5'SS Class:
major
3'SS Sequence:
ATTTTCACCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTATTTTCACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1
57.1
42.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
76.9
0.6
0.8
70.6
34.2
Minor 5ss
34.2
-1.8
3
44.2
43.2
Minor BPS
48
-0.1
1.8
59.34
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026359
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043221
19796436 - 19811305
14870