Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19800506_19800692_R

Intron Information:

Intron Rank:

146932

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

19800506 - 19800692

Intron Length:

187

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGC|GTGAGCAGG

5'SS Class:

weak_major

3'SS Sequence:

ACACTGCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTGCAC

U12 Branch Point Sequence:

TGTGTCTGCACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

57.3

0.17

1.4

50.6

47.7

Major BPS

52.5

0.06

1.4

65.3

41.6

Major PPT

62.2

0.28

0.9

54.5

35.6

Minor 5ss

34.3

-1.8

2.8

35.2

41.4

Minor BPS

48.2

-0.1

64.34

42.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026359

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043221

19796436 - 19811305

14870