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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19823985_19824278_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19823985 - 19824278
Intron Length:
294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGGAA
U12 Branch Point Sequence:
TGCTTTGGAAAC
Flanking Amino Acid:
PQFPALRDLELSVDLTPGQI
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
62.2
0.3
1.4
63.4
44.3
Major PPT
75
0.56
0.7
69
24.7
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
42.6
-0.5
2
52.3
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030196
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022104
19822803 - 19825763
2961