About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19824440_19824825_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19824440 - 19824825
Intron Length:
386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGATGC
5'SS Class:
major
3'SS Sequence:
CTTGCTGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
GCCTCCCTGACA
Flanking Amino Acid:
GVRGFQDHYDWWARNQFSSR
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
0.9
64.7
36.1
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
77.9
0.63
0.9
68.8
42
Minor 5ss
33
-1.9
3
38.6
41
Minor BPS
56.9
0.21
1.7
63.99
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030196
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022104
19822803 - 19825763
2961