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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19824959_19825061_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19824959 - 19825061
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGCGGC
5'SS Class:
major
3'SS Sequence:
TTCTGCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGGGAC
U12 Branch Point Sequence:
TGTTTCTGCCCC
Flanking Amino Acid:
DDTDTIVCPLEPGAAVGRLE
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.47
1.1
56.4
42.3
Major BPS
41.6
-0.5
1.5
34.5
43.7
Major PPT
74.8
0.56
0.8
66
35.9
Minor 5ss
35.4
-1.7
3.6
46.4
44.5
Minor BPS
39
-0.8
3.5
63.34
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030196
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022104
19822803 - 19825763
2961