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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19825124_19825238_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
19825124 - 19825238
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTCAG
5'SS Class:
major
3'SS Sequence:
TTTGGGCAGACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCAGAG
U12 Branch Point Sequence:
TTTGGGCAGACA
Flanking Amino Acid:
VAELLPGSCVGKVLGCLHES
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
64.9
42.8
Major BPS
50.2
0.01
1.5
54.7
43.1
Major PPT
59.9
0.22
1.2
54.2
45.1
Minor 5ss
27.7
-2.6
2.7
23.9
36.9
Minor BPS
35
-1.1
2.7
54.46
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030196
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022104
19822803 - 19825763
2961