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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19828317_19828979_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
19828317 - 19828979
Intron Length:
663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGCGCAGC
5'SS Class:
major
3'SS Sequence:
GGCACACCCCAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GGCACAC
U12 Branch Point Sequence:
TTCCCCTGCAGC
Flanking Amino Acid:
AVQRGGRWGWLSPCTMNHGT
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.4
0.36
1.1
54.2
45
Major BPS
44
-0.3
1.2
46.4
38.9
Major PPT
47.7
-0.1
1
38.2
34
Minor 5ss
32.8
-2
3
34
41.7
Minor BPS
46
-0.3
2.2
60.44
44.6

Associated Gene:

Gene:
KLHDC8B
Ensembl Gene ID:
ENSAPLG00000019922
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042645
19827924 - 19830408
2485