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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19844603_19847226_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
19844603 - 19847226
Intron Length:
2624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAGACATC
5'SS Class:
weak_major
3'SS Sequence:
TTCACATTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCCTTCACA
Flanking Amino Acid:
NKIKDKYDRYLQACLDKFEE
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.4
0.25
1.2
62.4
42.3
Major BPS
100
1.24
0.5
100
0
Major PPT
79.7
0.67
0.9
73.4
35.9
Minor 5ss
44.3
-0.6
3.3
64
41.1
Minor BPS
81.8
0.99
1.6
91.36
30.2

Associated Gene:

Gene:
CCDC36
Ensembl Gene ID:
ENSAPLG00000016107
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016798
19839459 - 19856417
16959