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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_1992714_1997672_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1992714 - 1997672
Intron Length:
4959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAA
U12 Branch Point Sequence:
GACTCTGTAACC
Flanking Amino Acid:
QKPSIQVQDQTFQSRPKHLT
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97
1.11
0.7
88.7
23.8
Major BPS
72.7
0.57
1
72.1
31.1
Major PPT
88.3
0.86
0.6
84.7
22.9
Minor 5ss
37.2
-1.4
3.3
52
45.2
Minor BPS
53.9
0.1
2
63.86
41.8

Associated Gene:

Gene:
DCP1A
Ensembl Gene ID:
ENSAPLG00000014921
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015566
1971236 - 2003138
31903