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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19949084_19949279_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19949084 - 19949279
Intron Length:
196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTGT
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTTGCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTGAC
U12 Branch Point Sequence:
TTTTCTTTTTTC
Flanking Amino Acid:
VYSPSRYSYQLLQSDSPQAE
Intron Amino Acid Position:
1285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
81.2
33.8
Major BPS
61.6
0.29
1.1
54.6
40.8
Major PPT
71
0.47
0.9
63.9
36.7
Minor 5ss
41.3
-1
3
58.7
45.8
Minor BPS
44.9
-0.4
3.6
73.85
37.7

Associated Gene:

Gene:
SETD5
Ensembl Gene ID:
ENSAPLG00000007096
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007409
19948484 - 19987618
39135