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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19952429_19955444_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19952429 - 19955444
Intron Length:
3016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CAGTCTTCATCT
Flanking Amino Acid:
SKSQENISSRWMVPTSVERL
Intron Amino Acid Position:
1215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.8
83.1
28.6
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
85.7
0.8
0.9
80.6
37
Minor 5ss
33.3
-1.9
3.4
45.9
43.7
Minor BPS
49.2
0.02
1.8
64.95
45.7

Associated Gene:

Gene:
SETD5
Ensembl Gene ID:
ENSAPLG00000007096
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007409
19948484 - 19987618
39135