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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19955729_19957276_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19955729 - 19957276
Intron Length:
1548

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTCAC
U12 Branch Point Sequence:
CTTTCCCTGACT
Flanking Amino Acid:
APQNPPQRKKVSLLEYRKRK
Intron Amino Acid Position:
1121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.7
100
0
Major BPS
59.5
0.24
1.2
63.3
35.6
Major PPT
83.6
0.76
0.8
81.3
30.7
Minor 5ss
31.3
-2.1
4
50.6
45.9
Minor BPS
71.8
0.77
1.7
88.28
36.8

Associated Gene:

Gene:
SETD5
Ensembl Gene ID:
ENSAPLG00000007096
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007409
19948484 - 19987618
39135