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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19959303_19961808_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19959303 - 19961808
Intron Length:
2506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATATG
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TTTAACTAGATG
Flanking Amino Acid:
SRCNTPLQFENVSSPESSPA
Intron Amino Acid Position:
946

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.2
33.9
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
84.7
0.78
0.7
76.7
32
Minor 5ss
38.7
-1.3
2.9
50.6
45.9
Minor BPS
47.9
-0.3
2
60.11
42

Associated Gene:

Gene:
SETD5
Ensembl Gene ID:
ENSAPLG00000007096
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007409
19948484 - 19987618
39135