Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19966944_19968513_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

19966944 - 19968513

Intron Length:

1570

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGTATG

5'SS Class:

strong_major

3'SS Sequence:

CTTTCTCCCTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CACTGAC

U12 Branch Point Sequence:

TTGCACTGACGT

Flanking Amino Acid:

AAVKYPKTKKYLVTEWLNDK

Intron Amino Acid Position:

737

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.6

0.89

0.9

81.8

38.5

Major BPS

61.3

0.28

52.7

34.2

Major PPT

0.74

0.7

81.1

Minor 5ss

-1.4

3.1

50.1

46.4

Minor BPS

43.3

-0.4

2.1

63.29

46.3

Associated Gene:

Gene:

SETD5

Ensembl Gene ID:

ENSAPLG00000007096

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007409

19948484 - 19987618

39135