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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19969948_19972034_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19969948 - 19972034
Intron Length:
2087

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CGG|GCAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTACATGTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTCCTTTTACA
Flanking Amino Acid:
EQGALVHSRRSREERKVEAI
Intron Amino Acid Position:
542

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1.1
89.8
26.9
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
70.6
0.46
1
62.2
43.8
Minor 5ss
29.5
-2.3
3.8
37.5
40.1
Minor BPS
69.9
0.62
1.6
80.97
34

Associated Gene:

Gene:
SETD5
Ensembl Gene ID:
ENSAPLG00000007096
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007409
19948484 - 19987618
39135