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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19972116_19972331_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19972116 - 19972331
Intron Length:
216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACAC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TTTGCCCTAGTA
Flanking Amino Acid:
EGPAAVSDNEVADKEEKQEG
Intron Amino Acid Position:
515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
68.4
36.7
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
85.6
0.8
0.6
84.6
23.2
Minor 5ss
31.6
-2.1
3.2
41.7
45
Minor BPS
53.1
0.09
2
71.97
40.5

Associated Gene:

Gene:
SETD5
Ensembl Gene ID:
ENSAPLG00000007096
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007409
19948484 - 19987618
39135