About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19973972_19978804_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19973972 - 19978804
Intron Length:
4833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTGTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCATAT
U12 Branch Point Sequence:
TTTTTGTTACAG
Flanking Amino Acid:
NNTVIGSQMQLQLGRVTRVQ
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.6
30
Major BPS
61.9
0.3
1.1
58.6
38.7
Major PPT
85.5
0.8
0.9
79.9
37.7
Minor 5ss
34.7
-1.7
2.9
44.4
43.1
Minor BPS
47.5
-0.3
2.4
63.72
44.3

Associated Gene:

Gene:
SETD5
Ensembl Gene ID:
ENSAPLG00000007096
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007409
19948484 - 19987618
39135