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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19982326_19982645_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19982326 - 19982645
Intron Length:
320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCGTTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAAAC
U12 Branch Point Sequence:
CCAGCTTCAATT
Flanking Amino Acid:
DGFLLKCEKCRGMSRGKVIR
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
59.6
0.24
1
65.2
28.2
Major PPT
75.5
0.57
1
72.2
37.8
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
49
0
1.7
60.07
44.3

Associated Gene:

Gene:
SETD5
Ensembl Gene ID:
ENSAPLG00000007096
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007409
19948484 - 19987618
39135