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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19982858_19983701_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
19982858 - 19983701
Intron Length:
844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TACTCGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTCACATTAAAA
Flanking Amino Acid:
KHSYRGLPYADHNYGAPPPP
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
74.6
35.3
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
80
0.67
0.9
76.6
37.1
Minor 5ss
35.1
-1.7
2.8
49.5
40.3
Minor BPS
59.1
0.28
1.8
70.98
40.5

Associated Gene:

Gene:
SETD5
Ensembl Gene ID:
ENSAPLG00000007096
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007409
19948484 - 19987618
39135