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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_19983808_19987443_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
19983808 - 19987443
Intron Length:
3636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTGAGTGTT
5'SS Class:
major
3'SS Sequence:
GCCCTTTCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TGGGTTTTACTT
Flanking Amino Acid:
TSYSDMAAGSDPESVEASPA
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
75
35.2
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
78.1
0.63
0.8
72.2
32.4
Minor 5ss
34.4
-1.8
3.4
45.6
43.6
Minor BPS
48.7
-0
1.7
62.99
42.5

Associated Gene:

Gene:
SETD5
Ensembl Gene ID:
ENSAPLG00000007096
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007409
19948484 - 19987618
39135