About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_1998438_2000784_F

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1998438 - 2000784
Intron Length:
2347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTCTGT
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTAATTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
LNNKIIPSLQTVQQNKESEV
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
64.2
42.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.5
0.69
0.9
83.1
32.3
Minor 5ss
56.1
0.21
2.4
74.2
42.1
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
DCP1A
Ensembl Gene ID:
ENSAPLG00000014921
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015566
1971236 - 2003138
31903