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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2000851_2001576_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2000851 - 2001576
Intron Length:
726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TGTTCTTTTACA
Flanking Amino Acid:
QTKTLSKTSQVTPPQFVTAT
Intron Amino Acid Position:
490

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.9
75.7
36.7
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
89.1
0.88
0.7
83.7
31.3
Minor 5ss
36.1
-1.6
3.3
47.1
48.3
Minor BPS
71.8
0.68
1.6
80.12
35.4

Associated Gene:

Gene:
DCP1A
Ensembl Gene ID:
ENSAPLG00000014921
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015566
1971236 - 2003138
31903