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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20011762_20013070_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20011762 - 20013070
Intron Length:
1309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
ATGTCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TGCTCCTCACGT
Flanking Amino Acid:
NKSTKFFSRPGALLRISRLS
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88
25.3
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
69
0.43
0.9
59.3
37.5
Minor 5ss
38
-1.3
3.1
51.9
44.9
Minor BPS
48.2
-0
2.1
68.65
47.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022004
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044756
20011574 - 20013493
1920