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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_2001796_2003057_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2001796 - 2003057
Intron Length:
1262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCCTGTCC
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATGTTCTGATGT
Flanking Amino Acid:
LQEALIHLIKNDSRFLNTIH
Intron Amino Acid Position:
563

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.6
0.11
1.4
51.4
40.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
99
1.1
0.4
96
13.8
Minor 5ss
32.4
-2
3.3
43.4
43.7
Minor BPS
47.3
-0.1
2
66.52
44.3

Associated Gene:

Gene:
DCP1A
Ensembl Gene ID:
ENSAPLG00000014921
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015566
1971236 - 2003138
31903