About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20029288_20029523_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20029288 - 20029523
Intron Length:
236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGTGC
5'SS Class:
major
3'SS Sequence:
ATCTTCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TCTTTGCTGATA
Flanking Amino Acid:
PETIHIWKTNSLPLRFWINI
Intron Amino Acid Position:
2046

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
65
42.1
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
83.1
0.74
0.8
77.6
30.4
Minor 5ss
36
-1.6
3.5
50.3
46.3
Minor BPS
45.4
-0.3
2.3
61.82
39

Associated Gene:

Gene:
PLXNB1
Ensembl Gene ID:
ENSAPLG00000008562
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008965
20028749 - 20061000
32252