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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20031873_20032391_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20031873 - 20032391
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGCAGA
5'SS Class:
major
3'SS Sequence:
TTGATGACTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGTTTGTTATCT
Flanking Amino Acid:
HRPDPDTLDLEWRSGLAGHL
Intron Amino Acid Position:
1874

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
66.8
40.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
66.3
0.37
1
59.8
41.5
Minor 5ss
33.4
-1.9
2.8
36.7
42.5
Minor BPS
54.7
0.23
2.3
80.05
42

Associated Gene:

Gene:
PLXNB1
Ensembl Gene ID:
ENSAPLG00000008562
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008965
20028749 - 20061000
32252