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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20033219_20033651_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20033219 - 20033651
Intron Length:
433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATGAA
U12 Branch Point Sequence:
ATTTCTGTCAGG
Flanking Amino Acid:
MSICLYAFVRDSVGEPLYML
Intron Amino Acid Position:
1766

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
77.5
33.5
Major BPS
60.3
0.26
1.2
51.7
43.9
Major PPT
74.6
0.55
1
68.8
42
Minor 5ss
37
-1.5
2.9
42.4
44.3
Minor BPS
43
-0.6
2.6
56.74
45.3

Associated Gene:

Gene:
PLXNB1
Ensembl Gene ID:
ENSAPLG00000008562
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008965
20028749 - 20061000
32252