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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20034493_20034684_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20034493 - 20034684
Intron Length:
192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTCC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCCACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAC
U12 Branch Point Sequence:
TCTCTCTCCACC
Flanking Amino Acid:
LLNSKLFLTKFIHTLEIQRT
Intron Amino Acid Position:
1684

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.6
33.4
Major BPS
67.8
0.44
1
75
30.1
Major PPT
73.4
0.53
0.9
66.6
34.3
Minor 5ss
38
-1.4
3.2
50.9
45.8
Minor BPS
48.8
-0.1
2
63.43
42.2

Associated Gene:

Gene:
PLXNB1
Ensembl Gene ID:
ENSAPLG00000008562
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008965
20028749 - 20061000
32252