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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20034903_20035718_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20034903 - 20035718
Intron Length:
816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATCAT
U12 Branch Point Sequence:
ATGCGGTCAACA
Flanking Amino Acid:
VRDRCKKEFTDLMTEMMDLT
Intron Amino Acid Position:
1611

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1.1
73.5
37.5
Major BPS
73
0.57
1.2
74
41.2
Major PPT
80.2
0.68
0.7
72.9
32
Minor 5ss
30.9
-2.2
2.7
35.9
40.8
Minor BPS
41.7
-0.6
2.4
55.39
43.4

Associated Gene:

Gene:
PLXNB1
Ensembl Gene ID:
ENSAPLG00000008562
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008965
20028749 - 20061000
32252