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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20036329_20036640_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20036329 - 20036640
Intron Length:
312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGGAAT
5'SS Class:
major
3'SS Sequence:
GCTTTCGCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCACAG
U12 Branch Point Sequence:
TGCTGCATCACA
Flanking Amino Acid:
EGTDLLPEFTVQMGNLNFLL
Intron Amino Acid Position:
1528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
69.9
42.1
Major BPS
48
-0.1
1.5
60.7
37.6
Major PPT
75.3
0.57
0.9
65.7
41
Minor 5ss
33
-1.9
3.5
48.4
47.6
Minor BPS
45
-0.4
2.4
60.7
45.1

Associated Gene:

Gene:
PLXNB1
Ensembl Gene ID:
ENSAPLG00000008562
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008965
20028749 - 20061000
32252