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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20036818_20037630_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20036818 - 20037630
Intron Length:
813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACACAA
5'SS Class:
major
3'SS Sequence:
ACCTCTGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTAGCCCGATTT
Flanking Amino Acid:
HKPGSVISVEGENLDLAISK
Intron Amino Acid Position:
1469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.2
67.8
39.3
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
74.2
0.54
0.9
64.9
40.7
Minor 5ss
36.8
-1.5
3.1
47.7
47.7
Minor BPS
44.9
-0.3
2
66.52
44.1

Associated Gene:

Gene:
PLXNB1
Ensembl Gene ID:
ENSAPLG00000008562
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008965
20028749 - 20061000
32252