Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20037874_20039216_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20037874 - 20039216

Intron Length:

1343

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGCGTGG

5'SS Class:

major

3'SS Sequence:

CTTTGGCATTTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

CTTTTTTTATTT

Flanking Amino Acid:

PEGALCSVQQFEEPCLVNSS

Intron Amino Acid Position:

1388

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.3

0.34

1.3

52.2

47.1

Major BPS

96.5

1.15

0.6

34.2

Major PPT

69.5

0.44

66.6

39.7

Minor 5ss

40.3

-1.1

3.5

55.4

48.8

Minor BPS

63.5

0.5

1.6

78.46

Associated Gene:

Gene:

PLXNB1

Ensembl Gene ID:

ENSAPLG00000008562

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008965

20028749 - 20061000

32252