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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20039386_20039571_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20039386 - 20039571
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAAGA
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
TTTTCTTTTCCA
Flanking Amino Acid:
TFAEPPKSFLSGGRVLRVHG
Intron Amino Acid Position:
1331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
65.2
40.7
Major BPS
67.7
0.44
1
58
38.9
Major PPT
95
1.01
0.6
88.4
28.7
Minor 5ss
31.1
-2.2
3.2
40.8
45
Minor BPS
47
-0.2
3.6
78.96
37.6

Associated Gene:

Gene:
PLXNB1
Ensembl Gene ID:
ENSAPLG00000008562
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008965
20028749 - 20061000
32252