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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_20040085_20041666_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20040085 - 20041666
Intron Length:
1582

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTGG
5'SS Class:
major
3'SS Sequence:
TTTTTTGTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
TGTCACTCATCT
Flanking Amino Acid:
GVSGHIFTYQNPELKSIVPT
Intron Amino Acid Position:
1227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
63.2
43.6
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
87.2
0.84
0.8
81.2
36.5
Minor 5ss
36.2
-1.6
3.2
47.4
48
Minor BPS
48.6
-0
2
72.24
43.7

Associated Gene:

Gene:
PLXNB1
Ensembl Gene ID:
ENSAPLG00000008562
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008965
20028749 - 20061000
32252